17 Feb 2022


Work on scripts to automate the production of test data for the smoke-screen tests in q2-dada2.

The first of these are used to subset data from larger fastq files, so that these smaller datasets can be run in a reasonable amount of time. Eventually this might be added to dev tools.

The other essentially hack into the _denoise_helper function and write the raw data to .fasta and .tsv files when running denoise. This data than can be used as the expected data for the tests.

Helpful Vim thingy:

:set list

shows whitespaces!